| Demo Scripts (in decreasing order of complexity): |
|
♦ FCTdemo.m |
- Demonstrates how to combine MATLAB with CalC
|
|
♦ simple.m |
- Another, simpler demo of 2D field plots in MATLAB, with a spherical obstacle (vesicle)
|
|
♦ CaM.par |
- CalC version 7 example demonstrating cooperative Ca2+ binding by calmodulin.
|
|
♦ loop.par |
- use the "for" loop statement to test convergence with increasing spatial resolution
|
|
♦ demoHH.par |
- In this demo, Hodgkin-Huxley action potential controls GHK equation for Ca2+ current
|
|
♦ demoGHK.par |
- demo script implementing GHK equation for Ca2+ current, with one arbitrary activation gate
|
|
♦ demo.par |
- demo script showing the most basic PDE functionality of CalC.
|
|
♦ free.par |
- free (unbuffered) Ca2+ diffusion around a point source (Ca2+ channel), in spherically symmetric geometry.
|
|
♦ ode.par |
- use CalC to integrate a simple system of ODEs (harmonic oscillator)
|
|
♦ calculator.par |
- primitive simulation-less script introducing the "for" loop and print statements
|
Make sure to indicate appropriate plot method within the script file:
• To view results in real time using xmgr/xmgrace, include the statement
plot.method xmgr, and
pipe the output when executing CalC:
calc.exe scriptName.par | xmgrace -pipe
• To produce plots in a graphics window, include the statement
plot.method gl
• To produce ASCII data files readable by MATLAB use
mute plots
or include the statement
plot.print filePrefix (see example
FCTdemo.m above).
• To produce binary files readable by MATLAB use
binary
and
dump plot statements (see example
readBinaryPlot.m).
Note that
Ygl graphics method is no longer supported. Future releases may restore cross-platform built-in graphics
capabilities. For more information about plotting, consult the
manual.
This material is based upon work supported by the
National Science Foundation grant
0417416.
Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author
and do not necessarily reflect the views of the National Science Foundation
Victor Matveev
This server is running a
Redhat distribution of
Linux.
Last modified: Dec 26, 2007