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Agrawal,
A., Perl, Y., Elhanan, G. (2013). Identifying Problematic Concepts in SNOMED CT
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C., Dimitriou, A., Theodoratos, D., Wu, X. (2013). In
Weiyi Meng, Ling Feng, Stéphane Bressan, Werner Winiwarter, Wei Song (Eds.) (Ed.), XReason:
A Semantic Approach that Reasons with Patterns to Answer XML Keyword Queries.
(pp. 16 pages (299-314)). 18th International Conference on Database Systems for
Advanced Applications (DASFAA), Proceedings Publisher: Springer.
Banerji,
S., Sinha, A., Liu, C. (2012). Novel Color HWML Descriptors for Scene and
Object Image Classification. Istanbul: the 3rd International Conference
on Image Processing Theory, Tools & Applications.
Banerji,
S., Sinha, A., Liu, C. (2012). Scene Image Classification: Some Novel
Descriptors. Seoul: IEEE International Conference on Systems, Man, and
Cybernetics.
Banerji,
S., Sinha, A., Liu, C. (2013). A New Bag of Words LBP (BoWL)
Descriptor for Scene Image Classification. York: 15th international conference
on Computer Analysis of Images and Patterns.
Banerji,
S., Sinha, A., Liu, C. (2013). HaarHOG: Improving the
HOG Descriptor for Image Classification. Manchester: IEEE International
Conference on Systems, Man, and Cybernetics.
Byron,
K., Wang, J. T. L., Wen, D. (2012). Genome-wide Search for Coaxial Helical
Stacking Motifs, Proceedings of the 12th IEEE International Conference on
Bioinformatics and Bioengineering, Larnaca, Cyprus,
November 2012, pp. 260-265.
Chen,
B., Curtmola, R. (2012). POSTER: Robust Dynamic
Remote Data Checking for Public Clouds (pp. 1043-1045). Proc. of the 19th ACM
Conference on Computer and Communications Security (CCS ’12).
Chen,
B., Curtmola, R. (2013). Towards Self-Repairing
Replication-Based Storage Systems Using Untrusted Clouds (pp. 377-388). Proc.
of the Third ACM Conference on Data and Application Security and Privacy.
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Daudelin,
D., Geller, J., Perl, Y. (2012). Using Gamification
and Crowdsourcing to Enhance Terminology Auditing (pp. 1714-1714). Chicago, IL:
Proceedings of the American Medical Informatics Association (AMIA) Annual
Meeting.
De,
C., Shih, F. Y. (2012). Enhance hybrid texture synthesis. Las Vegas, Nevada:
Proc. the 16th International Conference on Image Processing, Computer Vision,
& Pattern Recognition.
Ding,
X., Gibbons, P. B., Kozuch, M. A. (2013). A Hidden
Cost of Virtualization when Scaling Multicore Applications (vol. 2013). USENIX.
www.usenix.org/conference/hotcloud13/tech-schedule/workshop-program
Geller,
J., Ochs, C., Perl, Y., Xu, J. (2012). New Abstraction Networks and a New
Visualization Tool in Support of Auditing the SNOMED CT Content (pp. 237-246).
Chicago, IL: Proceedings of the American Medical Informatics Association (AMIA)
Annual Meeting.
He,
Z., Halper, M. H., Perl, Y., Elhanan, G. (2012).
Clinical clarity versus terminological order -- the readiness of SNOMED CT
concept descriptors for primary care (pp. 1-6). Proceedings of the 2nd
International Workshop on Managing Interoperability and Complexity in Health
Systems (MIXHS'12).
He,
Z., Ochs, C., Soldatova, L., Perl, Y., Arabandi, S., Geller, J. (2013). Auditing Redundant Import
in Reuse of a Top Level Ontology for the Drug Discovery Investigations Ontology
(pp. 46-49). Montreal, Quebec: Workshop on Vaccine and Drug Ontology Studies
(VDOS 2013) collocated with Semantic Trilogy 2013.
Houle,
M. E., Ma, X., Nett, M., Oria,
V. (2012). Dimensional Testing for Multi-Step Similarity Search (pp. 299-308).
Brussels, Belgium: IEEE International Conference on Data Mining.
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Ji,
X., Chun, S. A., Geller, J. (2013). In Robert De Virgilio,
Fausto Giunchiglia, Letizia Tanca (Ed.), Social Infobuttons: Integrating Open Health Data with Social Data
using Semantic Technology. New York, NY: Proceedings of the Fifth Workshop on
Semantic Web Information Management (SWIM).
Li,
X., Ng, S.-K., Wang, J. T. (2012). Proceedings of the 3rd Workshop on
Biological Data Mining and its Applications in Healthcare. IEEE.
Liu,
M. (2012). A Study of Transportability of an Existing Smoking Status Detection
Module across Institutions (vol. 2012, pp. 577-586). American Medical
Informatics Association Annual Symposium.
Mili,
A., Abercrombie, R., Sheldon, F. (2013). Risk Assessment Methodology Based on
the NISTIR 7628 Guideline (46th ed., pp. 8 pages). Washington DC: ACM/IEEE.
www.hicss.hawaii.edu/
Mili,
A., Jilani, L. L., Derbel,
I. (2013). In Jose Cordeiro and David Marca and Marten van Sinderen
(Ed.), ACME+ for Software Architecture Analysis (pp. 429-437). Reykjavik,
Iceland: SciTePress.
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Mili,
A., Jilani, L. L., Derbel,
I. (2013). In Leszek Maciaszek
and Joaquim Felipe (Ed.), Architecture Level Prediction of Software Quality
Attributes (pp. 15-24). Angers: SciTePress.
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Mili,
A., Rosner, N., Lopez Bombo,
C. G., Aguirre, N., Jaoua, A., Frias, M. (2013). In
Natarajan Shankar (Ed.), Parallel Bounded Verification of Alloy Models by Transcoping (pp. 15). Palo Alto, CA: SRI International.
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Nakayama,
M. K. (2012). Confidence Intervals for Quantiles When
Applying Replicated Latin Hypercube Sampling and Sectioning (vol. 2012, pp. 8).
Vista, CA: Autumn Simulation Conference, The Society for Modeling &
Simulation International. scs.org/autumnsim#.UGnAE5jA8oM
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M. K. (2012). In C. Laroque, J. Himmelspach,
R. Pasupathy, O. Rose, and A. M. Uhrmacher
(Ed.), Using Sectioning to Construct Confidence Intervals for Quantiles When Applying
Importance Sampling (2012th ed., vol. 2012, pp. 12). Hanover, MD: Winter
Simulation Conference. wintersim.org
Nakayama,
M. K., 2012 Autumn Simulation Conference, "Confidence Intervals for Quantiles When Applying Replicated Latin Hypercube Sampling
and Sectioning," The Society for Modeling & Simulation International,
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Ochs,
C., Agrawal, A., Perl, Y., Halper, M. H., Tu, S., Carini, S., Sim, I., Noy, N., Musen, M., Geller, J. (2012). Deriving an Abstraction
Network to Support Quality Assurance in OCRe (pp.
681-689). Chicago, IL: Proceedings of the American Medical Informatics
Association (AMIA) Annual Meeting.
Ochs,
C., He, Z., Perl, Y., Arabandi, S., Halper, M. H., Geller, J. (2013). Choosing the Granularity
of Abstraction Networks for Orientation and Quality Assurance of the Sleep
Domain Ontology (pp. 84-89). Montreal, Quebec: 4th International Conference on
Biomedical Ontology ICBO 2013.
Ochs,
C., Perl, Y., Geller, J. (2013). BLUSNO: A System for Orientation,
Visualization, and Quality Assurance of SNOMED CT Using Abstraction Networks
(pp. 127-128). Montreal, Quebec: 4th International Conference on Biomedical
Ontology ICBO 2013.
Sinha,
A., Banerji, S., Liu, C. (2012). Gabor-Based Novel
Local, Shape and Color Features for Image Classification. Doha: the 19th International
Conference on Neural Information Processing.
Sinha,
A., Banerji, S., Liu, C. (2012). Novel Color
Gabor-LBP-PHOG (GLP) Descriptors for Object and Scene Image Classification.
Mumbai: The Eighth Indian Conference on Vision, Graphics and Image Processing.
Sinha,
A., Banerji, S., Liu, C. (2012). Novel Color, Shape
and Texture-based Scene Image Descriptors. Cluj-Napoca: IEEE International
Conference on Intelligent Computer Communication and Processing.
Sinha,
A., Banerji, S., Liu, C. (2012). Novel Gabor-PHOG
Features for Object and Scene Image Classification. Hiroshima: Structural,
Syntactic, and Statistical Pattern Recognition, Lecture Notes in Computer
Science.
Talasila,
M., Curtmola, R., Borcea,
C. M. (2013). Improving Location Reliability in Crowd Sensed Data with Minimal
Efforts (pp. 1-8). Proc. of the Sixth Joint IFIP/IEEE Wireless and Mobile
Networking Conference. www.wmnc2013.org/
Tian,
J., Zhang, W., Wang, G. (2012). Duty-cycle Scheduling for Intruder Detection in
Wireless Sensor Networks. The 24th IASTED International Conference on Parallel
and Distributed Computing and Systems (PDCS).
Yi
Yu, Roger Zimmermann, Ye Wang, Vincent Oria: Recognition
and Summarization of Chord Progressions and Their Application to Music
Information Retrieval. In proceedings of IEEE International Symposium on
Multimedia, ISM 2012: 9-16.
Zhong,
L., Wang, J. T. L., Wen, D., Shapiro, B. A. (2012). Pre-miRNA
Classification via Combinatorial Feature Mining and Boosting, Proceedings of
the 2012 IEEE International Conference on Bioinformatics and Biomedicine,
Philadelphia, Pennsylvania, October 2012, pp. 369-372.
Refereed Journal Articles Published
Aziz, A., Haque, M. E., Borcea, C. M., Hassan, Y. K., Yamada, S. (2013). Managing
Disconnected Mobile Nodes in a Delay Tolerant Network with HALF Routing
Protocol. IEICE Transactions on Communications, E96-B(7), 15.
search.ieice.org/bin/summary.php?id=e96-b_7_1691&category=B&year=2013&lang=E&abst=
Agrawal, A., He, Z., Perl, Y., Wei, D., Halper, M. H., Elhanan, G., Chen, Y. (2013). The readiness
of SNOMED problem list concepts for meaningful use of electronic health
records. Artificial Intelligence in Medicine, 58(2), 73-80.
Aird, K. M., Zhang, G., Li, H., Tu, Z., Bilter, B. G., Garipov, A., Wu,
H., Wei, Z., Wagner, S. N., Herlyn, M., Zhang, R.
(2013). Suppression of Nucleotide Metabolism Underlies the Establishment and
Maintenance of Oncogene-Induced Senescence. Cell reports, 3(4), 1252–1265.
Banerji, S., Sinha, A., Liu, C. (2013). New Image Descriptors based on Color,
Texture, Shape, and Wavelets for Object and Scene Image Classification. Neurocomputing, 117, 173-185.
Bao, M., Cervantes-Cervantes, M., Zhong, L., Wang,
J. T. (2012). Searching for Non-coding RNAs in Genomic Sequences Using ncRNAscout. Genomics, Proteomics & Bioinformatics, 10,
114-121.
Bitler, B. G., Fink, F. S., Wei, Z., Peterson, J. R., Zhang, R. (2013). A
High-Content Screening Assay for Small-Molecule Modulators of Oncogene-Induced
Senescence. Journal of biomolecular screening, 18(9),
1054-61.
Briskorn, D., Leung, J. Y. (2013). Minimizing Maximum Lateness of Jobs in
Inventory Constrai Scheduling. Journal of the
Operational Research Society, 1-14.
Byron, K., Laing, C., Wen, D., Wang, J. T. (2013). A
Computational Approach to Finding RNA Tertiary Motifs in Genomic Sequences: A
Case Study. Recent Patents on DNA & Gene Sequences, 7, 115-122.
Calvin, J. M. (2012). An adaptive univariate global optimization algorithm and its
convergence rate under the Wiener measure. Informatica,
22(4), 489-505.
Cardinale, C. J., Wei, Z., Panossian, S., Wang, F., Kim,
C. E., Mentch, F. D., Chiavacci,
R. M., Kachelries, K. E., Pandey, R., Grant, S. F., Baldassano, R. N., Hakonarson, H.
(2013). Targeted resequencing identifies defective
variants of decoy receptor 3 in pediatric-onset inflammatory bowel disease.
Genes and immunity, 14, 447–452.
Cardone, G., Foschini, L., Borcea, C. M., Bellavista, P., Corradi, A., Talasila, M., Curtmola, R.
(2013). Fostering ParticipAction in Smart Cities: a
Geo-Social CrowdSensing Platform. IEEE Communications
Magazine, 51(6), 8. www.comsoc.org/commag
Cheng, K., McHugh, J., Deek,
F. P. (2013). On the Use of Paired Comparisons to Construct Group Preference
Scales for Decision Making. Journal of Group Decision and Negotiation, 22(3),
519-540.
Dong, J., Curtmola, R.,
Nita-Rotaru, C., Yau, D.
(2012). Pollution Attacks and Defenses in Wireless Inter-flow Network Coding
Systems. Transactions on Dependable and Secure Computing / IEEE Computer
Society, 9(5), 15 pages. www.computer.org/portal/web/tdsc
Duan, L., Liu, M. (2013). Adverse Drug Effect Detection. IEEE Journal of
Biomedical and Health Informatics, 17(2), 305-311.
Geller, J., He, Z., Perl, Y., Morrey,
P., Xu, J. (2013). Rule-based support system for multiple UMLS semantic type
assignments. Journal of Biomedical Informatics, 46(1), 97-110.
Gerbessiotis, A. (2012). An improved reliability bound of a probabilistic parallel
integer sorting algorithm. Elsevier, 112(34), 976-979.
http://www.sciencedirect.com/science/article/pii/S0020019012002608
Gu, H., Elhanan, G., Perl, Y., Hripcsak, G., Cimino, J. J., Xu, J., Chen, Y., Geller, J., Morrey, P. (2012). A study of terminology auditors'
performance for UMLS semantic type assignments. Journal of Biomedical
Informatics, 45(6), 1042-1048.
Gu, J., Liu, C. (2013). Feature Local Binary Patterns with Application to
Eye Detection. Neurocomputing, 113, 138-152.
Hu, H., Nau, M.,
Ehrenberg, P., Chenine, A., Daye, Z., Wei, Z.,
Michael, N., Vahey, M., Kim, J., Marovich,
M., Ratto-Kim, S. (2012). Distinct gene expression profiles
associated with the susceptibility of pathogen-specific CD4+ T cells to HIV-1
infection. Retrovirology, 9(s2), O46.
Hu, H., Nau, M.,
Ehrenberg, P., Chenine, A., Macedo,
C., Zhou, Y., Daye, Z., Wei, Z., Vahey, M., Michael,
N., Kim, J., Marovich, M., Ratto-Kim,
S. (2013). Distinct gene-expression profiles associated with the susceptibility
of pathogen-specific CD4 T cells to HIV-1 infection. Blood, 121(7), 1136-1144.
Hua, L., Wang, J. T., Ji,
X., Malhotra, A., Khaladkar, M., Shapiro, B. A.,
Zhang, K. (2012). A Method for Discovering Common Patterns from Two RNA
Secondary Structures and Its Application to Structural Repeat Detection.
Journal of Bioinformatics and Computational Biology, 10, 1-15.
Jiang, S., Ding, X., Yu, Y., Davis, K. (2013). A
Prefetching Scheme Exploiting both Data Layout and Access History on the Disk.
ACM Transactions on Storage (TOS), 9(3), 10:1--10:23. dl.acm.org/citation.cfm?id=2508010
Jilani, L. L., Mraihi, O., Louhichi,
A., Ghardallou, W., Bsaïes,
K., Mili, A. (2013). Invariant functions and
invariant relations: An alternative to invariant assertions. J. Symb. Comput. 48: 1-36.
Jostins, J., Ripke, S. K., Duerr,
R. H., McGovern, D. P., Hui, K. Y., Lee, J. C., Schumm, P., Sharma, Y., Anderson, C. A., Essers, J., Mitrovic, M., Ning, K., Cleynen, I., Theatre,
E., Spain, S. L., Raychaudhuri, S., Goyette, P., Wei, Z. (2012). Host-microbe interactions have
shaped the genetic architecture of inflammatory bowel disease. Nature,
491(7422), 119-124.
Kurose, H., Yamada, S., Borcea,
C. M. (2013). TCR: Tag Caching Router Architecture with Folksonomies for CGM
Contents. IEICE Transactions on Communications, J96-B(2), 12.
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Laing, C., Wen, D., Wang, J. T., Schlick,
T. (2012). Predicting Coaxial Helical Stacking in RNA Junctions. Nucleic Acids
Research, 40, 487-498.
Lee, K., Leung, J. Y., Pinedo,
M. (2013). Makespan Minimization in Online Scheduling
with Machine Eligibility. Annals of Operations Research, 204, 189-222.
Leung, J. Y., Chen, Z.-L. (2013). Integrated
Production and Distribution with Fixed Delivery Departure Dates. Operations
Research Letters, 41, 290-283.
Li, J., Glessner, J. T.,
Zhang, H., Hou, C., Wei, Z., Bradfield, J. P., Mentch, F. D., Guo, Y., Kim, C.,
Xia, Q., Chiavacci, R. M., Thomas, K. A., Qiu, H., Grant, S. F., Furth, S. L., Hakonarson,
H., Sleiman, P. M. (2013). GWAS of blood cell traits
identifies novel associated loci and epistatic
interactions in Caucasian and African-American children. Human molecular
genetics, 22(7), 1457-1464.
Li, X. H., Zhao, Y. Q., Liao, M., Shih, F. Y., Shi,
Y.-Q. (2012). Detection of tampered region for JPEG images by using mode based
first digit features. EURASIP Journal on Advances in Signal Processing, 190,
22. asp.eurasipjournals.com/content/2012/1/190
Li, X. H., Zhao, Y. Q., Liao, M., Shih, F. Y., Shi,
Y.-Q. (2012). Passive detection of copy-paste forgery between JPEG images.
Journal of Central South University of Technology, 19, 13.
Liu, C. (2013). Effective Use of Color Information
for Large Scale Face Verification. Neurocomputing,
101, 43-51.
Liu, M. (2012). Extracting Epidemiologic Exposure
and Outcome Terms from Literature using Machine Learning Approaches. International
Journal of Data Mining and Bioinformatics, 6(4), 447-459.
Liu, M. (2012). Software Project Risk Analysis using
Bayesian Networks with Causality Constraints. Decision Support Systems.
Liu, M. (2013). Comparative Analysis of Pharmacovigilance Methods in Detection of Adverse Drug
Reactions from Electronic Medical Records. Journal of the American Medical
Informatics Association, 20(3), 420-426.
Lynch, G., Shih, F. Y., Liao, H.-Y. (2013). An
efficient expanding block algorithm for image copy-move forgery detection.
Information Sciences, 239(8), 253-265.
Mili, A. (2012). Invariant Relations, Invariant Functions and Loop Functions.
Springer, 8(3), 195-212. http://link.springer.com/journal/11334
Mili, A., Aissa, A. B., Abercrombie, R., Sheldon,
F. (2012). Defining and Computing a Value Based Cybersecurity Measure.
Springer, 10(4), 443-453.
www.springer.com/business+%26+management/business+information+systems/journal/10257
O'Rawe, J., Jiang, T., Sun, G., Wu, Y., Wang, W., Bodily, P., Tian, L., Hakonarson, H.,
Johnson, W. E., Wei, Z., Wang, K., Lyon, G. (2013). Low concordance of multiple
variant-calling pipelines: practical implications for exome
and genome sequencing. Genome Medicine, 5(3), Article 28.
Pellegrino, R., Sunaga, D. Y., Guindalini,
C., Martins, R. C. S., Mazzotti, D. R., Wei, Z.,
Daye, Z. John, Andersen, M. L., Tufik, S. (2012).
Whole-blood genome-wide gene expression profile in males after prolonged
wakefulness and sleep recovery. Physiological Genomics, 44(21), 1003-1012.
Spirollari, J., Wang, S. X., Wang, J. T. (2012). Using Folding Ensemble and Stem
Probability Maximization Methods to Predict RNA H-Type Pseudoknots.
Tsinghua Science and Technology, 17, 691-700.
Wang, W., Hu, W., Hou, F.,
Hu, P., Wei, Z. (2012). SNVerGUI: a desktop tool for
variant analysis of next-generation sequencing data. Journal of Medical
Genetics, 49(12), 753-755.
Wei, Z., Wang, W., Bradfield, J. P., Li, J., Cardinale, C., Frackelton, E.,
Kim, C., Mentch, F. D., Van Steen, K., Visscher, P. M., Baldassano, R.
N., Hakonarson, H. (2013). Large Sample Size, Wide
Variant Spectrum, and Advanced Machine-Learning Technique Boost Risk Prediction
for Inflammatory Bowel Disease. The American Journal of Human Genetics, 92(6),
1008–1012.
Wu, X., Souldatos, S.,
Theodoratos, D., Dalamagas, T., Vassiliou,
Y., Sellis, T. (2012). Processing and Evaluating
Partial Tree Pattern Queries on XML data. IEEE Transactions on Data and
Knowledge Engineering, IEEE Computer Society Publications, 24(12), 16 pages
(2244-2259). http://www.computer.org/portal/web/tkde/home
Wu, X., Theodoratos, D. (2013). A Survey on XML
Streaming Evaluation Techniques. Very Large Databases Journal (VLDBJ),
Publisher: Springer, 26 pages (177 - 202). http://www.vldb.org/vldb_journal/
Younis, I., Dittmar, K., Wang, W., Foley, S. W.,
Berg, M. G., Hu, K. Y., Wei, Z., Wan, L., Dreyfuss,
G. (2013). Minor introns are embedded molecular switches regulated by highly
unstable U6atac snRNA. eLife,
2, e00780.
Zhang, X., Shasha, D.,
Song, Y., Wang, J. T. (2012). Fast Elastic Peak Detection for Mass Spectrometry
Data Mining. IEEE Transactions on Knowledge and Data Engineering, 24, 634-648.
Zhao, Y. Q., Liao, M., Shih, F. Y., Shi, Y.-Q.
(2012). Tampered region detection of inpainting JPEG
images. Optik- International Journal for Light and
Electron Optics, 6.
Zhong, L., Wang, J. T., Wen, D., Aris, V., Soteropoulos, P., Shapiro, B. A. (2013). Effective
Classification of MicroRNA Precursors Using Feature Mining and AdaBoost Algorithms. OMICS: A Journal of Integrative
Biology, 17, 486-493.
Refereed Book Chapters Published
Gu,
J., Liu, C. (2012). In K. Saeed and T. Nagashima
(Ed.), Local Texture Descriptors for Biometric Detection: New Local
Quaternary Pattern Descriptors and Case Study on Eye Detection (pp.
129-151). Springer: Biometrics and Kansei
Engineering.
Wei, Z., Minturn, J.,
Rappaport, E., Brodeur, G., Li, H. (2013). Network-Based
Analysis of Multivariate Gene Expression Data (pp. 121-139). Statistical
Methods for Microarray Data Analysis/Springer.
Wei, Z., Baldassano, S., Hakonarson, H.
(2012). In Petar Mamula,
Jonathan E. Markowitz, Robert N. Baldassano (Ed.), Genetics
of Inflammatory Bowel Diseases (pp. 3-12). Pediatric Inflammatory Bowel
Disease/Springer.
Preface Published
Li, X., Ng, S.-K.,
Wang, J. T. (2012). Preface to the IEEE ICDM 3rd Workshop on Biological Data
Mining and its Applications in Healthcare (pp. i-iii).
IEEE.