Foundations of Mathematical Biology

Matlab Files
ChemicalReactions01.m

ChemicalReactions02.m

AllostericInhibition01.m

Notes
E. Sontag, Lecture Notes on Mathematical Systems Biology (2011)

E. Sontag, Molecular Cell Biology: a quick introduction for non-biologists (2010)

Papers
L. A. Segel, Simplification and scaling, SIAM Review (1972)

L. A. Segel & M. Slemrod, The quasi-steady state approximation, SIAM Review (1989)

S. C. Kou, Stochastic networks in nanoscale biophysics: modeling enzymatic reacion of a single protein, Journal of the American Statistical Associateion (2008)

M. Mincheva & G. Craciun, Multigraph conditions for multistability, oscillations and pattern formation in biochemical reaction networks, Proceedings of the IEEE (2008)

S. R. Neves & R. Iyengar, Modeling of signaling networks, BioEssays (2002)

G. Karlebach & R. Shamir, Modeling and analysis of gene regulatory networks (2008)

N. A. W. van Riel, Dynamics modeling and analysis of biochemical networks: mechanism-based models and model-based experiments (2006)

M. Graupner & N. Brunel, STDP in a bistable synapse model based on CaMKII and associated signaling pathways (2007)

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Department of Mathematical Sciences(DMS).

New Jersey Institute of Technology (NJIT).

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Horacio
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