1st Workshop on Data Mining in Bioinformatics
August 26, 2001
San Francisco, CA, USA
in conjunction with
7th ACM SIGKDD International Conference on Knowledge Discovery and Data
Mining
(KDD'2001)
Proceedings of the ACM SIGKDD Workshop on Data Mining in Bioinformatics
edited by Mohammed J. Zaki, Hannu T.T. Toivonen, and Jason T. L. Wang
:
Foreword ,
Mohammed J. Zaki, Hannu T.T. Toivonen, and Jason T. L. Wang,
pp. i - ii.
Part I (Invited Paper & Gene Expression)
Invited Paper:
Determination of RNA folding pathway
functional intermediates using a massively parallel genetic algorithm
,
Bruce A. Shapiro, David Bengali, and Wojciech Kasprzak,
National Cancer Institute,
USA, pp. 1.
Extracting knowledge from gene expression data: A case study
of Batten Disease, Simon M. Lin, Sumeer Dhar,
and Rose-Mary N. Boustany,
Duke University Medical Center, USA, pp. 2 - 7.
Part II (Microarrays)
Mining microarray expression data for classifier gene-cores, Goutham
Kurra, Wen Niu, and Raj Bhatnagar, University of Cincinnati, USA,
pp. 8 - 14.
Classification of genes using probabilistic models of microarray expression
profiles, Paul Pavlidis, Christopher Tang,
and William S. Noble, Columbia
University, USA, pp. 15 - 21.
Analysis of an associative memory neural network for pattern identification
in gene expression data, Silvio Bicciato, Mario Pandin,
Giuseppe Didone',
and Carlo Di Bello, University of Padova and Cittadella Hospital, Italy,
pp. 22 - 30.
Part III (Sequence Assembly)
A
learning algorithm for string assembly, Mark K. Goldberg,
Darren T. Lim,
and Malik Magdon-Ismail, RPI, USA,
pp. 31 - 37.
A probabilistic approach to sequence assembly validation, Sun Kim,
Li Liao, and Jean-Francois Tomb, Indiana University and DuPont, USA,
pp. 38 - 43.
Part IV: (Invited Paper & Proteins)
Invited Paper:
Shared challenges in data mining and
computational biology, Charles Elkan, University of California, San
Diego, USA, pp. 44.
Learning to recognize brain specific proteins based on low-level features
from on-line prediction servers, Mikael Huss, Henrik Bostrom, Lars
Asker, and Joakim Coster, Vitrual Genetics Laboratory, Sweden,
pp. 45 - 49.
Investigation of bagging-like effects and decision trees versus neural
nets in protein secondary structure prediction, Nitesh Chawla,
Thomas E. Moore, Kevin Bowyer, Lawrence O. Hall, Clayton Springer,
and Philip Kegelmeyer,
University of South Florida and Sandia National Labs., USA,
pp. 50 - 59.
Part V (Sequence Modeling & Clustering)
Maximum entropy methods for biological sequence modeling,
Eugen C. Buehler and Lyle H. Ungar, University of Pennsylvania, USA,
pp. 60 - 64.
Hierarchical cluster analysis of SAGE data for cancer profiling,
Raymond T. Ng, Jorg Sander, and Monica C. Sleumer, University of British
Columbia, Canada,
pp. 65 - 72.
A scalable algorithm for clustering protein sequences,
Valerie Guralnik and George Karypis, University of Minnesota, USA,
pp. 73 - 80.
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WORKSHOP CO-CHAIRS:
Mohammed J. Zaki, Rensselaer Polytechnic Institute (zaki@cs.rpi.edu
)
Hannu T.T. Toivonen, University of Helsinki and Nokia Research Center
(Hannu.TT.Toivonen@nokia.com)
Jason T. L. Wang, New Jersey Institute of Technology (jason@cis.njit.edu)
PROGRAM COMMITTEE:
Chuck Baldwin, Lawrence Livermore National Laboratory
Chris Bystroff, Rensselaer Polytechnic Institute
Shi-Kuo Chang, University of Pittsburgh
Wesley W. Chu, University of California, Los Angeles
Diane J. Cook, University of Texas at Arlington
Charles Elkan, University of California, San Diego
Janice Glasgow, Queen's University, Canada
Richard Hughey, University of California, Santa Cruz
Hasan Jamil, Mississippi State University
Minoru Kanehisa, Kyoto University
Simon M. Lin, Duke University Medical Center
Jacob V. Maizel, Jr., National Institutes of Health
Sharad Mehrotra, University of California at Irvine
Shinichi Morishita, University of Tokyo
Jane Richardson, Duke University
Isidore Rigoutsos, IBM Thomas J. Watson Research Center
Bruce Shapiro, National Institutes of Health
Vassilis J. Tsotras, University of California, Riverside
Alex Tuzhilin, New York University/Stern School of Business
Jeff Vitter, Duke University
Cathy H. Wu, Georgetown University Medical Center
Michael Zucker, Rensselaer Polytechnic Institute
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