Part I: Finding Patterns in Sequences
-
Chapter 1.
Discovering Patterns in DNA Sequences by the Algorithmic
Significance Method; Aleksandar Milosavljevic (Genometrix Inc.),
3 - 23.
-
Chapter 2.
Assembling Blocks; Jorja G. Henikoff (Fred Hutchinson Cancer
Research Center),
24 - 29.
-
Chapter 3.
MEME, MAST, and Meta-MEME: New Tools for Motif Discovery in
Protein Sequences; Timothy Bailey, Michael E. Baker,
Charles P. Elkan, William N. Grundy (San Diego Supercomputer
Center, University of California at San Diego Department of
Medicine and Department of Computer Science and Engineering,
Columbia University),
30 - 54.
-
Chapter 4.
Pattern Discovery and Classification in Biosequences;
Jason T. L. Wang, Thomas G. Marr, Steve Rozen, Dennis Shasha, et al.
(NJIT, Genomica Corporation, MIT Whitehead Institute for Biomedical
Research, NYU Courant Institute),
55 - 74.
Part II: Finding Patterns in 3D Structures
-
Chapter 5.
Motif Discovery in Protein Structure Databases;
Janice Glasgow, Evan Steeg, Suzanne Fortier
(Queen's University Department of Computing and Information Science
and Department of Chemistry, Canada),
77 - 96.
-
Chapter 6.
Systematic Detection of Protein Structural Motifs;
Kentaro Tomii, Minoru Kanehisa
(Kyoto University Institute for Chemical Research, Japan),
97 - 110.
-
Chapter 7.
Representation and Matching of Small Flexible Molecules
in Large Databases of 3D Molecular Information;
Isidore Rigoutsos, Daniel Platt, Andrea Califano, David Silverman
(IBM T. J. Watson Research Center),
111 - 129.
Part III: System Components for Discovery
-
Chapter 8.
A Framework for Biological Pattern Discovery on Networks of
Workstations; Bin Li, Dennis Shasha, Jason T. L. Wang
(NYU Courant Institute, NJIT),
133 - 144.
-
Chapter 9.
Discovering Concepts in Structural Data;
Diane J. Cook, Lawrence B. Holder, Gehad Galal
(University of Texas at Arlington Department of Computer Science
and Engineering),
145 - 159.
-
Chapter 10.
Overview: A System for Tracking and Managing the Results from
Sequence Comparison Programs; David P. Yee, Judith Bayard Cushing,
Tim Hunkapiller, Elizabeth Kutter, et al. (Zymogenetics Inc.,
Evergreen State College, University of Washington Department of
Molecular Biotechnology),
160 - 182.
-
Chapter 11.
RNA Structure Analysis: A Multifaceted Approach;
Bruce A. Shapiro, Wojciech Kasprzak, Jin Chu Wu, Kathleen Currey
(National Cancer Institute, University of Maryland Medical School),
183 - 215.
Glossary, 216 - 225.
References, 226 - 247.
Index, 248 - 251.
|
