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Computational Intelligence
and Pattern Analysis
in Biological Informatics

Edited by

Ujjwal Maulik
Sanghamitra Bandyopadhyay
Jason T. L. Wang

Wiley, 2010, ISBN 978-0-470-58159-9

Table of Contents at Wiley

PART I: INTRODUCTION
  • Chapter 1. Swagatam Das, Ajith Abraham, B. K. Panigrahi: Computational Intelligence: Foundations, Perspectives, and Recent Trends. 3-37.
  • Chapter 2. Basabi Chakraborty: Fundamentals of Pattern Analysis: A Brief Overview. 39-58.
  • Chapter 3. Kevin Byron, Miguel Cervantes-Cervantes, Jason T. L. Wang: Biological Informatics: Data, Tools, and Applications. 59-69.

PART II: SEQUENCE ANALYSIS

  • Chapter 4. T. Sobha Rani, S. Durga Bhavani, S. Bapi Raju: Promoter Recognition Using Neural Network Approaches. 73-97.
  • Chapter 5. Francesco Masulli, Stefano Rovetta, Giuseppe Russo: Predicting microRNA Prostate Cancer Target Genes. 99-115.

PART III: STRUCTURE ANALYSIS

  • Chapter 6. Dongrong Wen, Jason T. L. Wang: Structural Search in RNA Motif Databases. 119-130.
  • Chapter 7. Sourangshu Bhattacharya, Chiranjib Bhattacharyya, Nagasuma R. Chandra: Kernels on Protein Structures. 131-167.
  • Chapter 8. G. Agarwal, D. C. Dinesh, N. Srinivasan, Alexandre G. de Brevern: Characterization of Conformational Patterns in Active and Inactive Forms of Kinases Using Protein Blocks Approach. 169-187.
  • Chapter 9. Aaron Smalter, Jun Huan: Kernel Function Applications in Cheminformatics. 189-235.
  • Chapter 10. Soumi Sengupta, Sanghamitra Bandyopadhyay: In Silico Drug Design Using a Computational Intelligence Technique. 237-256.

PART IV: MICROARRAY DATA ANALYSIS

  • Chapter 11. Indrajit Saha, Ujjwal Maulik: Integrated Differential Fuzzy Clustering for Analysis of Microarray Data. 259-276.
  • Chapter 12. Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay: Identifying Potential Gene Markers Using SVM Classifier Ensemble. 277-291.
  • Chapter 13. Ujjwal Maulik, Anasua Sarkar: Gene Microarray Data Analysis Using Parallel Point Symmetry-Based Clustering. 293-306.

PART V: SYSTEMS BIOLOGY

  • Chapter 14. Jieun Jeong, Jake Y. Chen: Techniques for Prioritization of Candidate Disease Genes. 309-324.
  • Chapter 15. Angshuman Bagchi: Prediction of Protein-Protein Interactions. 325-347.
  • Chapter 16. Malay Bhattacharyya, Sanghamitra Bandyopadhyay: Analyzing Topological Properties of Protein-Protein Interaction Networks: A Perspective Toward Systems Biology. 349-368.

Index, 369 - 372.

If you have questions, have found bugs or typos, or want to comment on the presentation or content of the book, please send email to wangj@njit.edu.