BNFO 615 Data Analysis in Bioinformatics, Fall 2013

Time & Place

Monday: 6:00PM - 9:05PM, GITC 2315C

Teaching Staff

Instructor: Zhi Wei, Office Hours: Mondays 2:30pm-5:00pm, Fridays 11:30am-12:00pm, or by appointment, GITC 3801, email: zhiweiXnjit.edu, phone: (973) 642-4497
Teaching Assistant: Wei Wang, ww42@njit.edu

Textbooks

“Using R for Introductory Statistics”, by John Verzani, Chapman & Hall/CRC, 2004, ISBN 1584884509

Statistical Methods in Bioinformatics: An Introduction” by Ewens WJ and Grant G, the Springer Press, 2005, ISBN 0387400826

Announcements:

Sep 30: Lab group information is here.

Aug 22: the first class is scheduled on Sept 9, please find course slides, lab exercise and homework from Moodle.

Course Information: Description, Prerequisites, Requirements, Collaboration


 

Papers and Other Reference Materials

General

R resources

Tentative weekly course plan (subject to change):
Topic
Date
Remarks
Introduction and a Primer of Biology 09/09/13
 
Intro to R essentials 09/16/13 Lab 1 Readings: S1.12, 2.5-2.6; R.1, R.4.2, 4.5
Intro to Probability Quiz 1 09/23/13
Readings: S1.1-1.5,1.8-1.10; R.2, R.5, R.E
Bayes Rule
09/30/13
 
Data exploration Quiz 2
10/07/13
Readings: R.2, R 4.3
Microarray data anlaysis (I) 10/14/13
 
Microarray data anlaysis (II)  Quiz 3 10/21/13
  10/28/13
 
Midterm Exam  11/04/13  
Clustering Analysis
11/11/13  
Differentially Expression Analysis (I) Quiz 4
11/18/13  
Differentially Expression Analysis (II) 11/25/13  
Gene Set Enrichment analysis (I) Quiz 5 12/02/13
Gene Set Enrichment analysis (II)/Final Review 12/09/13
Final exam TBD TBD