BNFO 615 Data Analysis in Bioinformatics, Fall 2013 |
Time & Place
Monday: 6:00PM - 9:05PM, GITC 2315C
Teaching Staff
Instructor: Zhi Wei, Office Hours: Mondays
2:30pm-5:00pm, Fridays 11:30am-12:00pm, or by appointment, GITC 3801, email: zhiweiXnjit.edu, phone: (973) 642-4497
Teaching Assistant:
Wei Wang, ww42@njit.edu
Textbooks
“Using R for Introductory Statistics”, by John Verzani, Chapman & Hall/CRC, 2004, ISBN 1584884509
“Statistical Methods in Bioinformatics: An Introduction” by Ewens WJ and Grant G, the Springer Press, 2005, ISBN 0387400826
Announcements:
Sep 30: Lab group information is here.
Aug 22: the first class is scheduled on Sept 9, please find course slides, lab exercise and homework from Moodle.
Course Information: Description, Prerequisites, Requirements, Collaboration
Papers and Other Reference Materials |
General
R resources
Topic |
Date |
Remarks |
Introduction and a Primer of Biology | 09/09/13 |
|
Intro to R essentials | 09/16/13 | Lab 1 Readings: S1.12, 2.5-2.6; R.1, R.4.2, 4.5 |
Intro to Probability Quiz 1 | 09/23/13 |
Readings: S1.1-1.5,1.8-1.10; R.2, R.5, R.E |
Bayes Rule |
09/30/13 |
|
Data
exploration Quiz 2 |
10/07/13 |
Readings: R.2, R 4.3 |
Microarray data anlaysis (I) | 10/14/13 |
|
Microarray data anlaysis (II) Quiz 3 | 10/21/13 |
|
10/28/13 |
||
Midterm Exam | 11/04/13 | |
Clustering Analysis |
11/11/13 | |
Differentially Expression Analysis
(I)
Quiz 4 |
11/18/13 | |
Differentially Expression Analysis (II) | 11/25/13 | |
Gene Set Enrichment analysis (I) Quiz 5 | 12/02/13 | |
Gene Set Enrichment analysis (II)/Final Review | 12/09/13 | |
Final exam | TBD | TBD |