For your extra credit assignment perform the following steps:

1. Compute all pairwise alignments of sequences in your .fasta file.

2. Compute Jukes Cantor evolutionary distances. If the pij value >= 0.75
then assign a distance of dij = 1000000.

3. Compute the UPGMA tree from the distance matrix.

Submit as hardcopies on Wednesday May 4th your

a. pairwise alignments,

b. distance matrix,

c. and tree in newick format.