#==== The Query Motif ====# >IRE ((((((((.(((((......))))))))))))) 1 NNNNNNNNCNNNNNCAGWGHNNNNNNNNNNNNN 33 #==== Hits ====# 1 46 1-33 NM_003234:3444-3543 36-68 Homo sapiens transferrin receptor (p90, CD71) (TFR 2 44 1-33 NM_014585:151-250 50-83 Homo sapiens solute carrier family 40 (iron-regula 3 42 1-33 NM_000146:1-100 12-46 Homo sapiens ferritin, light polypeptide (FTL), mR 4 39 1-33 NM_003234:3394-3493 37-67 Homo sapiens transferrin receptor (p90, CD71) (TFR 4 39 1-33 NM_003234:3844-3943 40-70 Homo sapiens transferrin receptor (p90, CD71) (TFR 6 32 1-33 NM_000032:1-52 5-44 Homo sapiens aminolevulinate, delta-, synthase 2 ( 6 32 1-33 NM_003234:3944-4043 53-81 Homo sapiens transferrin receptor (p90, CD71) (TFR Detailed Results for the top list: =============================================================== Rank: 1 Score: 46 Query: 33 (ss:7,ds:26) Identity: str: 100%; seq:100% (ss:100%, ds:100%) Gap: 0 (ss:0, ds:0) Mismatch: 0 (ss:0, ds:0) ((((((((.(((((......))))))))))))) ((((((((.(((((......))))))))))))) IRE: 1 NNNNNNNNCNNNNNCAGWGHNNNNNNNNNNNNN 33 ||||||||||||||||||||||||||||||||| NM_003234:3444-3543: 36 ATAATTATCGGAAGCAGTGCCTTCCATAATTAT 68 =============================================================== Rank: 2 Score: 44 Query: 33 (ss:7,ds:26) Identity: str: 97%; seq:100% (ss:100%, ds:100%) Gap: 1 (ss:1, ds:0) Mismatch: 0 (ss:0, ds:0) ((((((((.(((((......)))))))) ))))) ((((((((.(((((......)))))))).))))) IRE: 1 NNNNNNNNCNNNNNCAGWGHNNNNNNNN-NNNNN 33 |||||||||||||||||||||||||||| ||||| NM_014585:151-250: 50 TCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGA 83 =============================================================== Rank: 3 Score: 42 Query: 33 (ss:7,ds:26) Identity: str: 94%; seq:100% (ss:100%, ds:100%) Gap: 2 (ss:2, ds:0) Mismatch: 0 (ss:0, ds:0) (((( (( ((.(((((......))))))))))))) ((((.((.((.(((((......))))))))))))) IRE: 1 NNNN-NN-NNCNNNNNCAGWGHNNNNNNNNNNNNN 33 |||| || ||||||||||||||||||||||||||| NM_000146:1-100: 12 CTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAG 46 =============================================================== Rank: 4 Score: 39 Query: 31 (ss:7,ds:24) Identity: str: 93%; seq:100% (ss:100%, ds:100%) Gap: 0 (ss:0, ds:0) Mismatch: 0 (ss:0, ds:0) ((((((((.(((((......))))))))))))) ((((((( .(((((......))))) ))))))) IRE: 1 NNNNNNNNCNNNNNCAGWGHNNNNNNNNNNNNN 33 ||||||| ||||||||||||||||| ||||||| NM_003234:3394-3493: 37 TATTTAT-CAGTGACAGAGTTCACT-ATAAATG 67 =============================================================== Rank: 4 Score: 39 Query: 31 (ss:7,ds:24) Identity: str: 93%; seq:100% (ss:100%, ds:100%) Gap: 0 (ss:0, ds:0) Mismatch: 0 (ss:0, ds:0) ((((((((.(((((......))))))))))))) ((((((( .(((((......))))) ))))))) IRE: 1 NNNNNNNNCNNNNNCAGWGHNNNNNNNNNNNNN 33 ||||||| ||||||||||||||||| ||||||| NM_003234:3844-3943: 40 ACATTAT-CGGGAGCAGTGTCTTCC-ATAATGT 70 =============================================================== Rank: 6 Score: 32 Query: 33 (ss:7,ds:26) Identity: str: 82%; seq:100% (ss:100%, ds:100%) Gap: 7 (ss:7, ds:0) Mismatch: 0 (ss:0, ds:0) (( ((((((.(((((......)))))))) ))) )) ((...((((((.(((((......)))))))).)))...)) IRE: 1 NN---NNNNNNCNNNNNCAGWGHNNNNNNNN-NNN---NN 33 || |||||||||||||||||||||||||| ||| || NM_000032:1-52: 5 TGTCATTCGTTCGTCCTCAGTGCAGGGCAACAGGACTTTA 44 =============================================================== Rank: 6 Score: 32 Query: 29 (ss:7,ds:22) Identity: str: 87%; seq:100% (ss:100%, ds:100%) Gap: 0 (ss:0, ds:0) Mismatch: 0 (ss:0, ds:0) ((((((((.(((((......))))))))))))) (((((( .(((((......))))) )))))) IRE: 1 NNNNNNNNCNNNNNCAGWGHNNNNNNNNNNNNN 33 |||||| ||||||||||||||||| |||||| NM_003234:3944-4043: 53 AATTAT--CGGGAACAGTGTTTCCC--ATAATT 81 The score distribution is: Max: 46 Min: 32 score distribution: one '=' equals 1 < 33.0 |== [2] 33.0<-->34.0 | 34.0<-->35.0 | 35.0<-->36.0 | 36.0<-->37.0 | 37.0<-->38.0 | 38.0<-->39.0 |== [2] 39.0<-->40.0 | 40.0<-->41.0 | 41.0<-->42.0 |= [1] 42.0<-->43.0 | 43.0<-->44.0 |= [1] 44.0<-->45.0 | >45 |= [1] The score matrices used are : A C G U A 1 -1 -1 -1 C -1 1 -1 -1 G -1 -1 1 -1 U -1 -1 -1 1 AU CG GC GU UA UG AU 3 1 1 1 1 1 CG 1 3 1 1 1 1 GC 1 1 3 1 1 1 GU 1 1 1 3 1 1 UA 1 1 1 1 3 1 UG 1 1 1 1 1 3 Gap penalty is set as: -2.0