Your running parameters: -i Sample.Input -minw 13 -expw 16 -maxw 20 -o SampleOutput -n 2 -run 10 ####Motif 1### Search from width=13 to 20, with Expected width=16 ----GA Search Result---- Motif 1 Width:13 Fitness:134.92 Counts:21 Relative Entropy:1.52 TTAGGCCGAATTA TTAGGCCGAATTA rand_seq0 95 TTAGaCCGAATTA rand_seq1 99 TTAGGCgGAATTA rand_seq2 61 TaAGGaCGAATTA rand_seq3 63 TTAttCCGAATTA rand_seq4 27 TTAGGCCGAATTA rand_seq5 90 TTAGaCCGAATTA rand_seq6 16 TTAcGCCGAATcA rand_seq7 132 TcAGtCCGAgTTA rand_seq8 95 TTAGGCCGAgTTA rand_seq9 134 TTgGGCCGAATTA rand_seq10 44 TTAGGCCGAATTA rand_seq11 35 TTAGGaCGAATTA rand_seq12 43 TTAGGCCGAATcA rand_seq13 15 TTtGGCCGAtTTA rand_seq14 203 TTAGGCtGgATTA rand_seq15 61 TTAGGCCGAATTA rand_seq16 137 TTAGGCCGcATTA rand_seq17 164 TTAGGCCGAATTA rand_seq18 41 TTAGGCCGAATTA rand_seq19 202 TTAGGATGGACTA rand_seq5 51 ----GA Search Result---- Motif 1 Width:14 Fitness:160.17 Counts:21 Relative Entropy:1.53 ATTAGGCCGAATTA ATTAGGCCGAATTA rand_seq0 94 ATTAGaCCGAATTA rand_seq1 98 ATTAGGCgGAATTA rand_seq2 60 ATaAGGaCGAATTA rand_seq3 62 ATTAttCCGAATTA rand_seq4 26 ATTAGGCCGAATTA rand_seq5 89 ATTAGaCCGAATTA rand_seq6 15 ATTAcGCCGAATcA rand_seq7 131 ATcAGtCCGAgTTA rand_seq8 94 ATTAGGCCGAgTTA rand_seq9 133 ATTgGGCCGAATTA rand_seq10 43 ATTAGGCCGAATTA rand_seq11 34 ATTAGGaCGAATTA rand_seq12 42 ATTAGGCCGAATcA rand_seq13 14 ATTtGGCCGAtTTA rand_seq14 202 ATTAGGCtGgATTA rand_seq15 60 ATTAGGCCGAATTA rand_seq16 136 ATTAGGCCGcATTA rand_seq17 163 ATTAGGCCGAATTA rand_seq18 40 ATTAGGCCGAATTA rand_seq19 201 CTTAGGATGGACTA rand_seq5 50 ----GA Search Result---- Motif 1 Width:15 Fitness:183.02 Counts:21 Relative Entropy:1.53 AATTAGGCCGAATTA AATTAGGCCGAATTA rand_seq0 93 AATTAGaCCGAATTA rand_seq1 97 AATTAGGCgGAATTA rand_seq2 59 AATaAGGaCGAATTA rand_seq3 61 AATTAttCCGAATTA rand_seq4 25 AATTAGGCCGAATTA rand_seq5 88 AATTAGaCCGAATTA rand_seq6 14 AATTAcGCCGAATcA rand_seq7 130 AATcAGtCCGAgTTA rand_seq8 93 cATTAGGCCGAgTTA rand_seq9 132 AATTgGGCCGAATTA rand_seq10 42 AATTAGGCCGAATTA rand_seq11 33 AATTAGGaCGAATTA rand_seq12 41 AATTAGGCCGAATcA rand_seq13 13 cATTtGGCCGAtTTA rand_seq14 201 AATTAGGCtGgATTA rand_seq15 59 AATTAGGCCGAATTA rand_seq16 135 AATTAGGCCGcATTA rand_seq17 162 AATTAGGCCGAATTA rand_seq18 39 AATTAGGCCGAATTA rand_seq19 200 ACTTAGGATGGACTA rand_seq5 49 ----GA Search Result---- Motif 1 Width:16 Fitness:189.19 Counts:21 Relative Entropy:1.48 AATTAGGCCGAATTAA AATTAGGCCGAATTAc rand_seq0 93 AATTAGaCCGAATTAA rand_seq1 97 AATTAGGCgGAATTAA rand_seq2 59 AATaAGGaCGAATTAA rand_seq3 61 AATTAttCCGAATTAA rand_seq4 25 AATTAGGCCGAATTAg rand_seq5 88 AATTAGaCCGAATTAA rand_seq6 14 AATTAcGCCGAATcAA rand_seq7 130 AATcAGtCCGAgTTAA rand_seq8 93 cATTAGGCCGAgTTAc rand_seq9 132 AATTgGGCCGAATTAA rand_seq10 42 AATTAGGCCGAATTAA rand_seq11 33 AATTAGGaCGAATTAA rand_seq12 41 AATTAGGCCGAATcAA rand_seq13 13 cATTtGGCCGAtTTAA rand_seq14 201 AATTAGGCtGgATTAA rand_seq15 59 AATTAGGCCGAATTAc rand_seq16 135 AATTAGGCCGcATTAt rand_seq17 162 AATTAGGCCGAATTAA rand_seq18 39 AATTAGGCCGAATTAA rand_seq19 200 ACTTAGGATGGACTAA rand_seq5 49 ----GA Search Result---- Motif 1 Width:17 Fitness:197.93 Counts:20 Relative Entropy:1.47 AATTAGGCCGAATTAAC AATTAGGCCGAATTAcC rand_seq0 93 AATTAGaCCGAATTAAT rand_seq1 97 AATTAGGCgGAATTAAC rand_seq2 59 AATaAGGaCGAATTAAC rand_seq3 61 AATTAttCCGAATTAAG rand_seq4 25 AATTAGGCCGAATTAgC rand_seq5 88 AATTAGaCCGAATTAAC rand_seq6 14 AATTAcGCCGAATcAAC rand_seq7 130 AATcAGtCCGAgTTAAC rand_seq8 93 cATTAGGCCGAgTTAcC rand_seq9 132 AATTgGGCCGAATTAAC rand_seq10 42 AATTAGGCCGAATTAAT rand_seq11 33 AATTAGGaCGAATTAAC rand_seq12 41 AATTAGGCCGAATcAAC rand_seq13 13 AATTAGGCtGgATTAAC rand_seq15 59 AATTAGGCCGAATTAcG rand_seq16 135 AATTAGGCCGcATTAtC rand_seq17 162 AATTAGGCCGAATTAAT rand_seq18 39 AATTAGGCCGAATTAAT rand_seq19 200 ACTTAGGATGGACTAAT rand_seq5 49 ----GA Search Result---- Motif 1 Width:18 Fitness:192.56 Counts:20 Relative Entropy:1.4 tAATTAGGCCGAATTAAC CAATTAGGCCGAATTAcC rand_seq0 92 TAATTAGaCCGAATTAAT rand_seq1 96 CAATTAGGCgGAATTAAC rand_seq2 58 GAATaAGGaCGAATTAAC rand_seq3 60 AAATTAttCCGAATTAAG rand_seq4 24 TAATTAGGCCGAATTAgC rand_seq5 87 AAATTAGaCCGAATTAAC rand_seq6 13 GAATTAcGCCGAATcAAC rand_seq7 129 CAATcAGtCCGAgTTAAC rand_seq8 92 TcATTAGGCCGAgTTAcC rand_seq9 131 CAATTgGGCCGAATTAAC rand_seq10 41 TAATTAGGCCGAATTAAT rand_seq11 32 CAATTAGGaCGAATTAAC rand_seq12 40 TAATTAGGCCGAATcAAC rand_seq13 12 CAATTAGGCtGgATTAAC rand_seq15 58 GAATTAGGCCGAATTAcG rand_seq16 134 TAATTAGGCCGcATTAtC rand_seq17 161 TAATTAGGCCGAATTAAT rand_seq18 38 CAATTAGGCCGAATTAAT rand_seq19 199 CACTTAGGATGGACTAAT rand_seq5 48 ----GA Search Result---- Motif 1 Width:19 Fitness:184.73 Counts:20 Relative Entropy:1.33 atAATTAGGCCGAATTAAC ACAATTAGGCCGAATTAcC rand_seq0 91 ATAATTAGaCCGAATTAAT rand_seq1 95 CCAATTAGGCgGAATTAAC rand_seq2 57 GGAATaAGGaCGAATTAAC rand_seq3 59 CAAATTAttCCGAATTAAG rand_seq4 23 TTAATTAGGCCGAATTAgC rand_seq5 86 TAAATTAGaCCGAATTAAC rand_seq6 12 TGAATTAcGCCGAATcAAC rand_seq7 128 CCAATcAGtCCGAgTTAAC rand_seq8 91 GTcATTAGGCCGAgTTAcC rand_seq9 130 GCAATTgGGCCGAATTAAC rand_seq10 40 CTAATTAGGCCGAATTAAT rand_seq11 31 ACAATTAGGaCGAATTAAC rand_seq12 39 ATAATTAGGCCGAATcAAC rand_seq13 11 TCAATTAGGCtGgATTAAC rand_seq15 57 GGAATTAGGCCGAATTAcG rand_seq16 133 ATAATTAGGCCGcATTAtC rand_seq17 160 ATAATTAGGCCGAATTAAT rand_seq18 37 TCAATTAGGCCGAATTAAT rand_seq19 198 TCACTTAGGATGGACTAAT rand_seq5 47 ----GA Search Result---- Motif 1 Width:20 Fitness:178.02 Counts:20 Relative Entropy:1.27 catAATTAGGCCGAATTAAC CACAATTAGGCCGAATTAcC rand_seq0 90 TATAATTAGaCCGAATTAAT rand_seq1 94 CCCAATTAGGCgGAATTAAC rand_seq2 56 GGGAATaAGGaCGAATTAAC rand_seq3 58 ACAAATTAttCCGAATTAAG rand_seq4 22 ATTAATTAGGCCGAATTAgC rand_seq5 85 GTAAATTAGaCCGAATTAAC rand_seq6 11 CTGAATTAcGCCGAATcAAC rand_seq7 127 GCCAATcAGtCCGAgTTAAC rand_seq8 90 CGTcATTAGGCCGAgTTAcC rand_seq9 129 TGCAATTgGGCCGAATTAAC rand_seq10 39 CCTAATTAGGCCGAATTAAT rand_seq11 30 GACAATTAGGaCGAATTAAC rand_seq12 38 AATAATTAGGCCGAATcAAC rand_seq13 10 ATCAATTAGGCtGgATTAAC rand_seq15 56 CGGAATTAGGCCGAATTAcG rand_seq16 132 CATAATTAGGCCGcATTAtC rand_seq17 159 GATAATTAGGCCGAATTAAT rand_seq18 36 ATCAATTAGGCCGAATTAAT rand_seq19 197 ATCACTTAGGATGGACTAAT rand_seq5 46 ####Motif 2### Search from width=13 to 20, with Expected width=16 ----GA Search Result---- Motif 2 Width:13 Fitness:-57.26 Counts:21 Relative Entropy:0.73 GAaGtACaTTGgC GAAGCCCCTTGTC rand_seq0 13 AAGGCAGTCTGCC rand_seq1 117 AACGTAGATTGGC rand_seq3 133 GAATCAGATTGGG rand_seq5 115 GAATCACAATACC rand_seq6 108 AGCTTAGTATGCC rand_seq7 174 GAGGTGATTTGAC rand_seq8 177 AGCGACCATTGTG rand_seq9 86 AAGTGAAACTGCC rand_seq10 175 GAGGTACTCTGGG rand_seq11 179 GGAGGAGACAGGC rand_seq13 186 AGAGTACCTTATG rand_seq14 86 AAAGTAATTTGAC rand_seq15 192 GACTTACTCAGTG rand_seq16 46 GAATAACCATGAC rand_seq17 191 GACGGACCTTGGC rand_seq18 74 GAGTCAGATTAGG rand_seq5 145 GGCGGAGCCTACC rand_seq7 41 AAAGTCATCGGGC rand_seq15 135 CGGGGAGATTATC rand_seq17 47 GAGGCTATCTGTC rand_seq18 13 ----GA Search Result---- Motif 2 Width:14 Fitness:-54.79 Counts:21 Relative Entropy:0.71 TGAaGtACaTTGgC TGAAGCCCCTTGTC rand_seq0 12 CAAGGCAGTCTGCC rand_seq1 116 CAACGTAGATTGGC rand_seq3 132 CGAATCAGATTGGG rand_seq5 114 TGAATCACAATACC rand_seq6 107 CAGCTTAGTATGCC rand_seq7 173 TGAGGTGATTTGAC rand_seq8 176 TAGCGACCATTGTG rand_seq9 85 TAAGTGAAACTGCC rand_seq10 174 AGAGGTACTCTGGG rand_seq11 178 TGGAGGAGACAGGC rand_seq13 185 CAGAGTACCTTATG rand_seq14 85 CAAAGTAATTTGAC rand_seq15 191 TGACTTACTCAGTG rand_seq16 45 TGAATAACCATGAC rand_seq17 190 AGACGGACCTTGGC rand_seq18 73 CGAGTCAGATTAGG rand_seq5 144 AGGCGGAGCCTACC rand_seq7 40 AAAAGTCATCGGGC rand_seq15 134 CCGGGGAGATTATC rand_seq17 46 CGAGGCTATCTGTC rand_seq18 12 ----GA Search Result---- Motif 2 Width:15 Fitness:-59.88 Counts:21 Relative Entropy:0.68 CTGAaGtACaTTGgC ATGAAGCCCCTTGTC rand_seq0 11 CCAAGGCAGTCTGCC rand_seq1 115 CCAACGTAGATTGGC rand_seq3 131 TCGAATCAGATTGGG rand_seq5 113 TTGAATCACAATACC rand_seq6 106 CCAGCTTAGTATGCC rand_seq7 172 TTGAGGTGATTTGAC rand_seq8 175 CTAGCGACCATTGTG rand_seq9 84 CTAAGTGAAACTGCC rand_seq10 173 CAGAGGTACTCTGGG rand_seq11 177 TTGGAGGAGACAGGC rand_seq13 184 CCAGAGTACCTTATG rand_seq14 84 TCAAAGTAATTTGAC rand_seq15 190 ATGACTTACTCAGTG rand_seq16 44 CTGAATAACCATGAC rand_seq17 189 GAGACGGACCTTGGC rand_seq18 72 TCGAGTCAGATTAGG rand_seq5 143 AAGGCGGAGCCTACC rand_seq7 39 CAAAAGTCATCGGGC rand_seq15 133 TCCGGGGAGATTATC rand_seq17 45 GCGAGGCTATCTGTC rand_seq18 11 ----GA Search Result---- Motif 2 Width:16 Fitness:-51.88 Counts:21 Relative Entropy:0.69 ACTGAaGtACaTTGgC AATGAAGCCCCTTGTC rand_seq0 10 ACCAAGGCAGTCTGCC rand_seq1 114 CCCAACGTAGATTGGC rand_seq3 130 CTCGAATCAGATTGGG rand_seq5 112 CTTGAATCACAATACC rand_seq6 105 ACCAGCTTAGTATGCC rand_seq7 171 ATTGAGGTGATTTGAC rand_seq8 174 ACTAGCGACCATTGTG rand_seq9 83 ACTAAGTGAAACTGCC rand_seq10 172 CCAGAGGTACTCTGGG rand_seq11 176 ATTGGAGGAGACAGGC rand_seq13 183 ACCAGAGTACCTTATG rand_seq14 83 ATCAAAGTAATTTGAC rand_seq15 189 AATGACTTACTCAGTG rand_seq16 43 CCTGAATAACCATGAC rand_seq17 188 CGAGACGGACCTTGGC rand_seq18 71 TTCGAGTCAGATTAGG rand_seq5 142 CAAGGCGGAGCCTACC rand_seq7 38 ACAAAAGTCATCGGGC rand_seq15 132 ATCCGGGGAGATTATC rand_seq17 44 CGCGAGGCTATCTGTC rand_seq18 10 ----GA Search Result---- Motif 2 Width:17 Fitness:-58.02 Counts:21 Relative Entropy:0.66 ACTGAaGtACaTTGgCc AATGAAGCCCCTTGTCC rand_seq0 10 ACCAAGGCAGTCTGCCG rand_seq1 114 CCCAACGTAGATTGGCG rand_seq3 130 CTCGAATCAGATTGGGC rand_seq5 112 CTTGAATCACAATACCG rand_seq6 105 ACCAGCTTAGTATGCCA rand_seq7 171 ATTGAGGTGATTTGACC rand_seq8 174 ACTAGCGACCATTGTGC rand_seq9 83 ACTAAGTGAAACTGCCT rand_seq10 172 CCAGAGGTACTCTGGGG rand_seq11 176 ATTGGAGGAGACAGGCC rand_seq13 183 ACCAGAGTACCTTATGG rand_seq14 83 ATCAAAGTAATTTGACC rand_seq15 189 AATGACTTACTCAGTGT rand_seq16 43 CCTGAATAACCATGACT rand_seq17 188 CGAGACGGACCTTGGCC rand_seq18 71 TTCGAGTCAGATTAGGC rand_seq5 142 CAAGGCGGAGCCTACCC rand_seq7 38 ACAAAAGTCATCGGGCA rand_seq15 132 ATCCGGGGAGATTATCA rand_seq17 44 CGCGAGGCTATCTGTCG rand_seq18 10 ----GA Search Result---- Motif 2 Width:18 Fitness:-65.83 Counts:21 Relative Entropy:0.62 ACTGAaGtACaTTGgCca AATGAAGCCCCTTGTCCA rand_seq0 10 ACCAAGGCAGTCTGCCGG rand_seq1 114 CCCAACGTAGATTGGCGG rand_seq3 130 CTCGAATCAGATTGGGCT rand_seq5 112 CTTGAATCACAATACCGA rand_seq6 105 ACCAGCTTAGTATGCCAT rand_seq7 171 ATTGAGGTGATTTGACCA rand_seq8 174 ACTAGCGACCATTGTGCA rand_seq9 83 ACTAAGTGAAACTGCCTG rand_seq10 172 CCAGAGGTACTCTGGGGT rand_seq11 176 ATTGGAGGAGACAGGCCC rand_seq13 183 ACCAGAGTACCTTATGGT rand_seq14 83 ATCAAAGTAATTTGACCG rand_seq15 189 AATGACTTACTCAGTGTT rand_seq16 43 CCTGAATAACCATGACTC rand_seq17 188 CGAGACGGACCTTGGCCA rand_seq18 71 TTCGAGTCAGATTAGGCG rand_seq5 142 CAAGGCGGAGCCTACCCG rand_seq7 38 ACAAAAGTCATCGGGCAA rand_seq15 132 ATCCGGGGAGATTATCAC rand_seq17 44 CGCGAGGCTATCTGTCGT rand_seq18 10 ----GA Search Result---- Motif 2 Width:19 Fitness:-73.71 Counts:21 Relative Entropy:0.59 ACTGAaGtACaTTGgCcag AATGAAGCCCCTTGTCCAG rand_seq0 10 ACCAAGGCAGTCTGCCGGT rand_seq1 114 CCCAACGTAGATTGGCGGG rand_seq3 130 CTCGAATCAGATTGGGCTA rand_seq5 112 CTTGAATCACAATACCGAC rand_seq6 105 ACCAGCTTAGTATGCCATG rand_seq7 171 ATTGAGGTGATTTGACCAG rand_seq8 174 ACTAGCGACCATTGTGCAC rand_seq9 83 ACTAAGTGAAACTGCCTGT rand_seq10 172 CCAGAGGTACTCTGGGGTG rand_seq11 176 ATTGGAGGAGACAGGCCCG rand_seq13 183 ACCAGAGTACCTTATGGTG rand_seq14 83 ATCAAAGTAATTTGACCGT rand_seq15 189 AATGACTTACTCAGTGTTC rand_seq16 43 CCTGAATAACCATGACTCA rand_seq17 188 CGAGACGGACCTTGGCCAA rand_seq18 71 TTCGAGTCAGATTAGGCGA rand_seq5 142 CAAGGCGGAGCCTACCCGC rand_seq7 38 ACAAAAGTCATCGGGCAAA rand_seq15 132 ATCCGGGGAGATTATCACT rand_seq17 44 CGCGAGGCTATCTGTCGTA rand_seq18 10 ----GA Search Result---- Motif 2 Width:20 Fitness:-81.12 Counts:21 Relative Entropy:0.57 ACTGAaGtACaTTGgCcaga AATGAAGCCCCTTGTCCAGC rand_seq0 10 ACCAAGGCAGTCTGCCGGTG rand_seq1 114 CCCAACGTAGATTGGCGGGT rand_seq3 130 CTCGAATCAGATTGGGCTAG rand_seq5 112 CTTGAATCACAATACCGACG rand_seq6 105 ACCAGCTTAGTATGCCATGG rand_seq7 171 ATTGAGGTGATTTGACCAGA rand_seq8 174 ACTAGCGACCATTGTGCACT rand_seq9 83 ACTAAGTGAAACTGCCTGTG rand_seq10 172 CCAGAGGTACTCTGGGGTGA rand_seq11 176 ATTGGAGGAGACAGGCCCGT rand_seq13 183 ACCAGAGTACCTTATGGTGA rand_seq14 83 ATCAAAGTAATTTGACCGTC rand_seq15 189 AATGACTTACTCAGTGTTCA rand_seq16 43 CCTGAATAACCATGACTCAC rand_seq17 188 CGAGACGGACCTTGGCCAAA rand_seq18 71 TTCGAGTCAGATTAGGCGAA rand_seq5 142 CAAGGCGGAGCCTACCCGCC rand_seq7 38 ACAAAAGTCATCGGGCAAAC rand_seq15 132 ATCCGGGGAGATTATCACTA rand_seq17 44 CGCGAGGCTATCTGTCGTAC rand_seq18 10