| Topic |
Date |
Remarks |
| Background and Intro to Perl |
09/01/09 |
Slides Perl slides |
| Intro to Perl: Basic data types, I/O, Control structures |
09/04/09 |
Basic Unix command sheet Intructions for login to afs machines |
| Basic data types | 09/08/09 |
|
| File I/O, Control structures | 09/11/09 |
HW 1 |
| Control structures |
09/15/09 |
HW 2 |
| String manipulation |
09/18/09 |
HW 3 |
| Subroutines |
09/22/09 |
Slides HW 4 |
| Subroutines |
09/25/09 |
Slides HW 5 |
| Subroutines |
09/29/09 |
HW 6 |
| Sequence alignment |
10/02/09 |
HW 7 |
| Sequence alignment |
10/06/09 |
HW 8 |
| Sequence alignment |
10/09/09 |
|
| First mid-term |
10/13/09 |
In room KUPF 211 |
| Mid-term solution and BLAST to FASTA formatting |
10/16/09 |
HW 9 |
| Identifying conserved columns |
10/20/09 |
HW 10 |
| Alignment |
10/23/09 |
HW 11 |
| Alignment |
10/27/09 | HW 12 |
| Alignment |
11/03/09 |
Practice problems |
| Alignment |
11/06/09 | HW 12 (redo) |
| Extension gaps |
11/10/09 |
HW 13 |
| Sorting sequences by their length |
11/13/09 |
HW 14 |
| 11/17/09 |
||
| Second mid-term |
11/20/09 |
|
| Mid-term solution and multiple alignments |
12/01/09 |
HW 15 |
| Alignment |
12/04/09 |
Extra credit |