Selected Publications

  1. Christian Laing, Dongrong Wen, Jason T. L. Wang and Tamar Schlick, "Predicting Coaxial Helical Stacking in RNA Junctions," Nucleic Acids Research, 40(2):487-498, 2012.
  2. Stephen J. Griesmer, Miguel Cervantes-Cervantes, Yang Song and Jason T. L. Wang, "In Silico Prediction of Noncoding RNAs Using Supervised Learning and Feature Ranking Methods," International Journal of Bioinformatics Research and Applications, 7(4):355-375, 2011.
  3. Vandanaben Patel, Jason T. L. Wang, Shefali Setia, Anurag Verma, Charles D. Warden and Kaizhong Zhang, "On Comparing Two Structured RNA Multiple Alignments," Journal of Bioinformatics and Computational Biology, 8(6):967-980, 2010.
  4. Richipal Singh Bindra, Jason T. L. Wang and Paramjeet Singh Bagga, "Bioinformatics Methods for Studying MicroRNA and ARE-Mediated Regulation of Post-Transcriptional Gene Expression," International Journal of Knowledge Discovery in Bioinformatics, 1(3):97-112, 2010.
  5. Kevin Byron, M. Cervantes-Cervantes, Jason T. L. Wang, W.C. Lin and Yongkyu Park, "Mining roX1 RNA in Drosophila Genomes Using Covariance Models," International Journal of Computational Bioscience, 1(1):22-32, 2010.
  6. Junilda Spirollari, Jason T. L. Wang, Kaizhong Zhang, Vivian Bellofatto, Yongkyu Park and Bruce A. Shapiro, "Predicting Consensus Structures for RNA Alignments Via Pseudo-Energy Minimization," Bioinformatics and Biology Insights, 3:51-69, 2009.
  7. Dongrong Wen and Jason T. L. Wang, "Design of an RNA Structural Motif Database," International Journal of Computational Intelligence in Bioinformatics and Systems Biology, 1:32-41, 2009.
  8. Mugdha Khaladkar, Jianghui Liu, Dongrong Wen, Jason T. L. Wang and Bin Tian, "Mining Small RNA Structure Elements in Untranslated Regions of Human and Mouse mRNAs Using Structure-Based Alignment," BMC Genomics, 9:189, 2008.
  9. Mugdha Khaladkar, Vandanaben Patel, Vivian Bellofatto, Jeffrey Wilusz and Jason T. L. Wang, "Detecting Conserved Secondary Structures in RNA Molecules Using Constrained Structural Alignment," Computational Biology and Chemistry, 32:264-272, 2008.
  10. Mugdha Khaladkar, Vivian Bellofatto, Jason T. L. Wang, Bin Tian and Bruce A. Shapiro, "RADAR: A Web Server for RNA Data Analysis and Research," Nucleic Acids Research, 35:W300-W304, 2007.
  11. Jason T. L. Wang and Xiaoming Wu, "Kernel Design for RNA Classification Using Support Vector Machines," International Journal of Data Mining and Bioinformatics, 1:57-76, 2006.
  12. Jianghui Liu, Jason T. L. Wang, Jun Hu and Bin Tian, "A Method for Aligning RNA Secondary Structures and Its Application to RNA Motif Detection," BMC Bioinformatics, 6:89, 2005.