Amitabha
Bose
Journal Publications
1. Large, E, Roman, I., Kim, J., Cannon, J. Pazdera, J., Trainor, L., Rinzel, J. and Bose, A (2023) Dynamic models for musical rhythm perception and coordination, Front. Comput. Neurosci.17, 1151895.
1. Diekman,
C and Bose, A , (2022) Beyond the limits
of circadian entrainment: Non-24-hour sleep-wake disorder, shift work, and
social jet lag, J. Theoretical Biology, 545 , 111148
2. Liao, G, and Bose, A, (2022) Entrainment
within hierarchical circadian networks, Math Bio Sci 351, 108883.
3. Zemlianova, K, Bose, A and Rinzel, J (2022) A biophysical
counting mechanism for keeping time, Biological Cybernetics 116 , 205-216
4. Marcano, M, Bose, A and Bayman, P
(2021) A
one-dimensional map to study multi-seasonal coffee infestation by the coffee
berry borer, Math Bio Sci 333, 108530
5. Liao, G, Diekman, C, and
Bose, A, (2020) Entrainment
dynamics of forced hierarchical circadian systems revealed by 2-dimensional
maps, SIADS 19, 2135-2161.
6. Byrne, A, Rinzel, J, and
Bose, A (2020), Order-indeterminant
event-based maps for learning a beat, Chaos, 30, 083138
7. Martinez, D, Anwar, H, Bose,
A, Bucher, D and Nadim, F (2019), Short-term synaptic dynamics
control the activity phase of neurons in an oscillatory network, eLife:e46911
8. Bose, A, Byrne, A and Rinzel, J (2019), A neuromechanistic
model for rhythmic beat generation, PLoS Computational Biology, 15(5): e1006450
9. Akcay, Z., Huang, X., Nadim,
F. Bose, A. (2018) Phase-locking and bistability in neuronal networks with synaptic depression, Physica D, 264, 8-21.
10. Diekman, C. and Bose, A.
(2018) Reentrainment of the circadian pacemaker
during jet lag: East-west asymmetry and the effects of north-south travel, Journal of Theoretical
Biology, 437, 261-285.
11. Manchanda, K., Bose, A. and
Ramaswamy, R. (2017) Collective dynamics in
heterogeneous networks of neuronal cellular automata, Physica A, 487, 111-124.
12. Golowash, J., Bose, A., Guan,
Y., Salloum, D., Roeser, A. and Nadim,
F. (2017) A balance of outward and
linear inward ionic currents is required for the generation of slow wave
oscillations,
J. Neurophysiol. 118 1092-1104.
13. Diekman, C. and Bose, A.
(2016) Entrainment maps: A new tool
for understanding properties of circadian oscillator models, J. Biol. Rhyth., 31, 598-616.
14. Mouser, C., Bose, A. and
Nadim, F., (2016) The
role of electrical coupling in generating and modulating oscillations in a
neuronal network,
Math. Biosci., 278, 11-21.
15. Bose, A and Rubin, J., (2015)
Synaptic strategies for
optimizing burst length in reciprocally coupled neuronal networks, Int. J. Bifur. Chaos, 25, 1540004.
16. Bose, A., Golowasch, J.,
Guan, Y. and Nadim, F., (2014) Role of linear and
voltage-dependent ionic currents in the generation of slow wave oscillations, J. Comput. Neurosci. 37,
229-242.
17. Akcay, Z., Bose, A. and
Nadim, F. , (2014) Effects of synaptic
plasticity on phase and period locking of a network of two oscillatory neurons, J. Math. Neuro. 4:8; doi:10.1186/2190-8567-4-8
18. Kumar, R., Bose, A. and
Mallick, B., (2012) A mathematical model towards
understanding the mechanism of neuronal regulation of waking-NREMS-REMS states, PLoS ONE 7(8): e42059.
19. Nadim, F., Zhao, S., Zhao, L.
and Bose, A. (2011) Inhibitory feedback promotes
stability in an oscillatory network, J. Neural Eng. 8, 065001.
20. Singh, T.U., Manchanda, K.,
Ramaswamy, R. and Bose, A. (2011) Excitable nodes on random
graphs: Relating dynamics to network structure, SIADS, 10,
987-1012.
21. Bose, A. and Booth, V. (2011)
Co-existent activity patterns
in inhibitory neuronal networks with short-term synaptic depression, J.Theor. Biol., 272,
42-54.
22. Zhang, Y, Bose, A, and Nadim,
F (2009) The influence of the
A-current on the dynamics of an oscillator-follower feed-forward inhibitory
network , SIAM J. Appl. Dyn. Syst., 8
, 1564-1590.
23. Chandrasekaran, C, Matveev, V
and Bose, A (2009) Multistability of clustered states in a
globally inhibitory network, Physica D 238 253-263.
24. Zhang, Y, Bose, A, and Nadim,
F (2008) Predicting the activity phase
of a follower neuron with A-current in an inhibitory network, Biol. Cyber. 99
171-184.
25. Mouser, C, Nadim, F, and
Bose, A (2008) Maintaining phase of the
crustacean tri-phasic pyloric rhythm, J. Math. Biol, 57, 161-181.
26. Matveev, V, Bose, A and
Nadim, F, (2007) Capturing the bursting
dynamics of a two-cell inhibitory network using a one-dimensional map, J. Comput.
Neurosci., 23, 169-187.
27. Rubin, J. and Bose, A.
(2006), The geometry of neuronal
recruitment ,
Physica D, 221 , 37-57.
28. Ambrosio-Mouser, C., Nadim,
F. and Bose, A. (2006), The effects of varying the
timing of inputs on a neural oscillator , SIAM J. Appl. Dyn. Syst., 5 , 108-139.
29. Bose, A., Manor, Y. and
Nadim, F., (2004)"The activity phase of
postsynaptic neurons in a simplified rhythmic network.", J. Comput. Neurosci. 17 ,
245-261.
30. Rubin, J. and Bose, A.,
(2004) Localized activity patterns
in excitatory neuronal networks, Network: Comput. Neural Syst. 15 , 133-158.
31. Manor, Y., Booth, V., Bose,
A. and Nadim, F., (2003)"The contribution of synaptic depression to phase
maintenance in a model rhythmic network", J. of Neurophysiology 90 , 3513-3528.
32. Kunec, S. and Bose, A.
(2003), "High-frequency,
depressing inhibition facilitates synchroniztion in globally inhibitory
networks" ,
Network: Comput. Neural Syst. 14 , 647-672.
33. Booth, V. and Bose, A.
(2002), "Burst synchrony
patterns in hippocampal pyramidal cell model networks" , Network: Comput Neural
Syst. 13 , 157-177.
34. Bose, A., Manor, Y. and
Nadim, F. (2001) "Bistable oscillations
arising from synaptic depression" , SIAM Journal of Applied Mathematics 62 , 706-727.
35. Bose, A. and Recce, M.
(2001), "Phase precession and
phase locking of hippocampal pyramidal cells" Hippocampus, 11 ,
204-215.
36. Booth, V. and Bose, A. (2001)
"Neural mechanisms for
generating rate and temporal codes in model CA3 pyramidal cells" , Journal of Neurophysiology,
85 , 2432-2445.
37. Kunec, S and Bose, A. (2001),
"Role of synaptic delay
in organizing the behavior of self-inhibiting neurons", Physical Review E 63 ,
0219081-13.
38. Bose, A., Booth, V. and
Recce, M. (2000), "A temporal mechansism
for generating the phase precession of hippocampal place cells" , J. Comput. Neuro., 9,
39. Bose, A. and Kriegsmann, G.
(2000),"Large amplitude
solutions of spatially non-homgeneous non-local reaction diffusion
equations",
Methods and Applications of Analysis, 7 , 295-311.
40. Bose, A., Kopell, N. and
Terman, D. (2000), "Almost-synchronous
solutions for mutually coupled excitatory neurons", Physica D 140 ,
69-94.
41. Bose, A. (2000), "A geometric approach to singularly perturbed non-local
reaction diffusion equations",SIAM J. Math. Anal. 31, 431-454. Erratum
42. Bose, A. and Kriegsmann, G.
(1998), "Stability of localized
structures in non-local reaction diffusion equations", Methods and Applications of
Analysis, 5, 351-366.
43. Terman, D, Kopell, N and Bose,
A., (1998), "Dynamics of Two
Mutually Coupled Slow Inhibitory Neurons," Physica D, 117,
241-275.
44. Terman, D., Bose, A. and
Kopell, N. (1996), "Functional
Reorganization in Thalamocortical Networks: Transition Between Spindling and
Delta Sleep Rhythms, " Proc. Nat. Acad. Sci. 93, No. 26. 15417-15422.
45. Bose, A. and Jones, C.K.R.T.
(1995), "Stability of the
In-phase Travelling Wave Solution in a Pair of Coupled Nerve Fibers, " Indiana University
Mathematics Journal, 44, 189-220.
46. Bose, A. (1995), "Symmetric and Antisymmetric Pulses in Parallel Coupled
Nerve Fibres, "
SIAM J. Applied Math., 55 No. 6, 1650-1674.
47. Bambaugh, B., Bose,
A. Ditmire, T., Kennedy, C., Puseljic, D., Ruchti, R., Ryan, J.,
Baumbaugh, A. and Knickerbocker , K. (1990), " Computer automated data
acquisition and control for measurement of scintillation materials and
scintillating fibres"
IEEE Trans. On Nucluear Science , 37, 298-304.
48. Ruchti, R.,
Baumbaugh, B., Bose, A., Ditmire, T., Kennedy, C.,
Puseljic, D., Ryan, J., Baumbaugh, A., Knickerbocker,
K., Ellis, J., Mead, R. and Swanson, D. (1989), "Development of new
scintillating fiber detectors for high energy physics applications" IEEE Trans. On
Nucluear Science , 36, 146-149.
Computational Neuroscience
Conference Papers
Other Publications
Edited Books